| SimpleMDExercise | SimpleMDExerciseI | SimpleMDExerciseIII | SimpleMDExerciseIV |
In SimpleMDExerciseII, we shall get to the level of codes for microcanonical simulation of water system.
# With Internal Structure II : topologically water-like
The molecule in this section will be topologically denoted as L-M-R. As is the above case with, first step is to implement the constrained structure. (But we will no longer consider rigid body from now.) Then, we will fix L & R and apply an effective force only on M. Finally, we will consider the case with forces on each site.